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Gene & Protein in Disease                                                  Structure and function of USP7



            USP7 through binding and rearranging the switching loop   3.1. Targeting monoubiquitination by USP7
            in the CD, leading to about 100-fold increase in USP7   In monoubiquitination, a single Ub molecule attaches to
            enzymatic  activity .  In  addition,  this  process  can  be   substrate proteins. PTEN protein, one of the best-known
                           [30]
            increased with the help of allosteric activator guanosine   tumor suppressors which is involved in a plethora of
            5’-monophosphate synthase (GMPS) , where GMPS can   cancer  development, is  a  typical  protein  that  is  subject
                                         [32]
            binds to UBL1/2/3, subsequently increases the interaction   to monoubiquitination. PTEN can be ubiquitinated
            between CDs and UBL4/5, thereby promoting the USP7   in various ways, including monoubiquitination, K27-,
            activity . This process suggests that the UBL domains are
                  [32]
            indispensable for USP7 to perform its deubiquitinating   K48-, and K63-  linked polyubiquitination, to modulate
            functions.                                         its subcellular localization, aggregation, stability, and
                                                               functionality [40-42] . It is known that nuclear localization of
            2.3. The CD                                        PTEN is associated with monoubiquitination of PTEN
                                                               at K289, which is indispensable for its nuclear import
            The CD, which is essential for the cleaving process of   and tumor suppression . In addition, USP7 hydrolyzes
                                                                                  [43]
            the polyubiquitin chains, in USP7 is composed of 208–  monoubiquitination of PTEN, which leads to PTEN nuclear
            560 amino acids. It should be noted that the proteolytic   exclusion and loss of phosphatase activity, eventually
            activity of USP7 is highly diverse and varies depending   promoting prostate cancer tumorigenesis. Another
            on the specific substrate proteins . The catalytic triad
                                        [25]
            contains three types of amino acids, including cystine   example is mothers against decapentaplegic homolog
            (Cys),  histidine  (His),  and  asparagine  (Asn)/aspartic   3 (SMAD3) protein. The biological activity of SMAD3
            acid (Asp) residues , of which the Asn/Asp residue is   depends on the monoubiquitination modification. USP7
                            [33]
            important for polarization of His residue, which in return   interacts with SMAD3 and subsequently deubiquitinates
            stabilizes the catalytic activity of DUBs . Moreover, the   its monoubiquitination level, thereby repressing cancer
                                            [28]
            triad is rearranged in the presence of a covalently bound   progression in p53-deficient lung cancer. Furthermore,
            Ub aldehyde to generate a catalytically competent state   USP7 also deubiquitinates monoubiquitination of other
            of the CD . It is important to note that, in the absence   proteins including forkhead box protein O4, proliferating
                    [34]
                                                                                                   [44-46]
            of the UBL domains, the CD will lose almost all of its   cell nuclear antigen, histone H2B, and others  .
            activity.                                          3.2. Hydrolyzing K48-linked polyubiquitination by
            3. USP7 regulates diverse types of                 USP7
            ubiquitination                                     Compared with monoubiquitination, polyubiquitination
                                                               is more common in protein modification, and there
            DUBs can hydrolyze the polyubiquitin chain of target   are seven types of polyubiquitination on thousands of
            proteins, thereby protecting them from degradation   proteins. At present, USP7 is believed to have the largest
            or modulating  their function or  cellular  localization,   number of substrate proteins in terms of deubiquitination
            depending  on  the  types  of  ubiquitination  process .  As   as shown in Table 1. It is known that intratumoral hypoxia
                                                     [35]
            discussed above, ubiquitination is a process that covalently   can induce hypoxia-inducible factor 1-alpha (HIF-1α)
            attaches a Ub molecule to the specific lysine (K) residue   and subsequently promote tumorigenesis, metastasis, and
            on a substrate protein. In a Ub molecule, there is a highly   treatment resistance. A  previous study has revealed that
            conserved region, which is composed of the seven lysine   USP7 can remove the K48-linked polyubiquitination by
            residues, namely, K6, K11, K27, K29, K23, K48, and K63,   physically interacts with HIF-1α, thereby increasing the
            which may lead to the diverse forms of Ub modification.   protein stability and resulting in tumor cell epithelial-
            Based on the Ub chain, Ub modifications could be classified   mesenchymal  transition,  metastasis,  and  tumor
            into  monoubiquitination  (substrate  protein  tagged  with   progression .
                                                                        [47]
            a single Ub molecule) and polyubiquitination (substrate
            protein tagged with a multiple Ub molecule), and according   In addition, ADP-ribosylation factor 4 (ARF4) is a small
            to the Ub binding sites, ubiquitination are accordingly   guanine nucleotide-binding protein, which belongs to Ras
            named K6-, K11-, K27-, K29-, K23-, K48-, and K63-  superfamily  of  small  G  proteins.  Previous  studies  have
            linked ubiquitination . Importantly, USP7 can hydrolyze   demonstrated that ARF4 is an anti-apoptotic protein, which
                             [36]
            almost all types of Ub through monoubiquitination as   acts as a BAX inhibitor, and its function is indispensable in
            well as K48-  and K63-linked polyubiquitination [10,37] .   glioblastoma tumorgenesis [52,115] . Interestingly, USP7 has
            Furthermore, USP7 has been shown to markedly reduce   been shown to be significantly upregulated in glioblastoma
            the polyubiquitination levels of the substrate proteins,   patient samples. Further study revealed that USP7 directly
            thereby exerting diverse functions [20,38,39] .    binds  to ARF4,  catalyzes  the  removal  of  the  K48-linked


            Volume 1 Issue 2 (2022)                         3                      https://doi.org/10.36922/gpd.v1i2.118
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