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Gene & Protein in Disease                                        Amino acid metabolism in neurodegeneration



            identified the derangement of amino acid homeostasis,   histidine, leucine, and threonine were reduced in HD
            such as alterations in tryptophan levels. 68,69  A study   patients  compared to healthy  controls.  These significant
            employing  liquid chromatography-high resolution  mass   changes in amino acid levels could serve as potential clinical
            spectrometry-based  metabolomics  further  revealed   biomarkers. Moreover, another independent study utilizing
            an altered amino acid profile in PD patients, alongside   plasma and CSF samples for metabolomic analysis from
            alterations in organic acids, steroids, and lipids. 70  HD patients and controls confirmed several differences
              Interestingly,  the  gut  microbiota  has  been  in amino acid levels. In particular, levels of arginine and
            reported to exert immunomodulatory effects through   glycine were significantly increased and were associated
            tryptophan catabolites, which attenuate the secretion of   with disease progression, while a reduction in serine levels
                                                               was also reported.
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            proinflammatory cytokines.  In addition, serum analysis
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            comparing amino acid profiles between PD patients and   In  connection  with  amino acid  metabolism, several
            healthy individuals revealed significant differences in the   independent studies observed decreased levels of
            levels of alanine, arginine, phenylalanine, and threonine.   BCAAs in both the plasma and CSF of HD patients. 77,79
            Higher serum concentrations of these four amino acids have   Alterations in BCAA homeostasis have been observed in
            been positively correlated with shorter disease duration,   other neurodegenerative diseases, indicating a common
            suggesting a potential link to disease progression. 71  characteristic feature of neurodegeneration. The study
                                                               confirmed that  different  enzymes  involved  in BCAA
              The roles of mTOR signaling and the GCN2-ISR     synthesis are differentially expressed in the brain of the
            pathway in metabolic signaling cascades that sense amino   R6/2 mouse, an experimental model that mimics the
            acid  abundance  or  deprivation  are  well-documented.   pathophysiology of HD.
            mTOR signaling induces autophagy, an important
            physiological  cellular  process  responsible  for  protein   Interestingly, cysteine metabolism, normally tightly
            clearance and the maintenance of proteostasis within   regulated by the key enzyme cystathionine  γ-lyase
            the cell. In the context of PD, this signaling cascade is   (CSE) for its de novo synthesis, is also disrupted in
            expected to be upregulated. Indeed, mTOR signaling has   HD. This disruption affects signaling processes in the
            been reported to be activated in the cortex of patients   brain. In experimental mouse models of HD, significant
            with α-synuclein accumulation, contributing to impaired   downregulation of the CSE enzyme has been reported,
            autophagy.  Therefore, one potential therapeutic strategy   leading  to  significantly  lower  cysteine  levels.  Therefore,
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            could involve the use of mTOR inhibitors to enhance   enhancing CSE production might confer adaptive benefits
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            autophagy and mitigate the accumulation of neurotoxic   in HD.  Supporting this, another independent study has
            protein aggregates in the CNS parenchyma. From another   demonstrated that treatment with cysteine or  N-acetyl-
            perspective, the GCN2-ISR pathway also appears to play a   cysteine helps restore cysteine balance, suggesting a
            key role in disease progression. Although data are limited,   potentially promising therapeutic approach. 78
            it has been shown that activation of GCN2, mediated by   Last but not least, concerning cellular metabolic
            amino acid deficiency in the cellular microenvironment,   signaling, mTOR signaling pathways are also affected in
            leads to the activation of the ATF4 transcription factor.   HD, as expected. It has been speculated that huntingtin –
            ATF4, in turn, induces the expression of a specific subset   the protein that, due to inborn errors in the DNA, becomes
            of genes, including parkin. The induction of parkin in the   toxic and causes brain damage – induces mTOR signaling.
            substantia nigra, the brain region most affected by PD,   This finding is further supported by evidence that depletion
            has been associated with a lower risk of developing PD,   of the huntingtin gene in experimental animal models
            suggesting it may serve as a neuroprotective mechanism. 73  significantly attenuates mTOR activation.  Additional
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                                                               studies have indicated that inhibition of mTOR exerts a
            4.4. Amino acid metabolism in HD                   beneficial effect on disease progression by eliminating
            As previously mentioned, HD is a disorder well-characterized   toxicity mediated by CAG expansions through the
            in terms of its pathophysiology and genetic cause, marked   induction of autophagy. 80,81  To the best of our knowledge,
            by  profound  neurodegeneration  and  subsequent  axonal   there is surprisingly no available data on the role of GCN2
            loss. It has been speculated that disturbances in amino acid   signaling in the context of HD and how it is regulated in
            metabolism may contribute to the severe inanition in HD   the framework of the pathological condition HD.
            patients.  Metabolomic studies have confirmed alterations
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            in amino acid levels through the analysis of samples isolated   4.5. Amino acid metabolism in ALS
            from HD patients and healthy individuals.  Furthermore,   In the context of amino acid metabolism in ALS, CSF
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            the study indicated that plasma levels of asparagine, serine,   metabolomics analysis has revealed decreased concentrations

            Volume 3 Issue 3 (2024)                         9                               doi: 10.36922/gpd.3294
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