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Gene & Protein in Disease                                              ABCA12 gene in Harlequin ichthyosis



            pathogenesis as a self-sustaining cycle in which lipidomic   residual ABCA12 activity, where inflammation rather than
            disruption, innate immune activation, and secondary   complete lipid absence may predominate.
            barrier dysfunction reinforce one another.           Testing this hypothesis will require integrative research
              From a systems biology perspective, multi-omics   approaches  that  combine  advanced  lipidomic  profiling
            studies in related keratinization disorders such as lamellar   of HI skin to distinguish structural from inflammatory
            ichthyosis and atopic dermatitis have revealed that lipid   lipid species, and single-cell RNA sequencing to delineate
            deficiency in the stratum corneum does not merely   the composition and activation status of immune cell
            compromise the structural barrier but also initiates   populations in lesional versus unaffected epidermis. In
            inflammatory signaling cascades. 18,19  These pathways,   addition, keratinocyte models generated via CRISPR-
            often mediated by Toll-like receptors and inflammasomes,   Cas9 editing of ABCA12 could be employed to examine
            lead to the release of pro-inflammatory cytokines and   the cellular response to lipid perturbation and its link to
            recruitment of immune cells. Although such mechanisms   inflammatory signaling in vitro.  Together, these strategies
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            have not been comprehensively characterized in HI, the   may uncover new therapeutic targets and support the
            clinical presentation–marked by fissured, hyperkeratotic   repositioning of existing anti-inflammatory drugs within
            skin and recurrent infections–suggests a similar pattern   a precision medicine framework for HI. If validated, the
            of immune activation. In particular, the profound   inflammatory-lipidome axis could represent a paradigm
            deficiency of ω-hydroxyacyl sphingosines in HI, essential   shift in our understanding of HI, expanding the focus
            for acylceramide-mediated barrier formation, may alter   beyond structural lipid restoration to include active
            keratinocyte stress signaling pathways. This alteration   immunomodulation as a core component of treatment. 23
            could result in the upregulation of key cytokines, including
            interleukin (IL)-1β, IL-36γ, and tumor necrosis factor alpha   6. Challenges and future directions
            (TNF-α), which further compromise barrier integrity and   Despite the advances in genetic research and treatment
            drive chronic inflammation.                        options, several challenges remain in the management

              Supporting this hypothesis, bioinformatic pathway   of HI. The disease’s rarity, combined with the complexity
            enrichment analyses using KEGG and Reactome databases   of  ABCA12 mutations, makes it difficult to develop
            have identified significant intersections between lipid   standardized treatment protocols. The limited number
            metabolic pathways and inflammatory signaling cascades   of affected individuals globally creates challenges for
            in gene networks associated with ABCA12. Genes such as   conducting large-scale clinical trials, which are necessary
            ALOX12B, ELOVL4, and SMPD1, which are co-expressed   to validate emerging therapies. In addition, the high
            with ABCA12 during epidermal differentiation, contribute   variability in disease severity based on genotype–
            not only to the biosynthesis of structural lipids but also to   phenotype correlations necessitates highly personalized
            the production of lipid-derived inflammatory mediators,   treatment plans for each patient, requiring substantial
            including prostaglandins and leukotrienes.  These   resources and multidisciplinary care teams. 4
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            mediators  are  potent  activators  of  NF-κB  and  MAPK   This is where identification of mutations may play
            signaling pathways. This convergence suggests a feedback   a key role in the treatment of HI. Advances in mutation
            loop in which defective lipid biosynthesis amplifies   identification (e.g., WES, NGS) now enable tailored
            inflammatory signaling, which in turn further disrupts   HI management. For loss-of-function mutations (e.g.,
            lipid homeostasis and epidermal function.          p.Arg130), early aggressive barrier repair with ceramide-
              Clinically, patients  with HI  frequently  display signs   dominant  emollients  (discussed  above)  may  compensate
                                                                                        6,12
            of  persistent  erythema  and inflammatory  skin changes   for  absent  ABCA12  activity.   In  contrast,  missense
            that are only partially responsive to systemic retinoids   variants (e.g., p.Gly1501Val) with residual function
            and topical corticosteroids.  While these treatments are   may respond to lower-dose oral retinoids, minimizing
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                                                                     16,17
            typically employed for their effects on differentiation   toxicity.   Emerging therapies such as ABCA12-targeted
            and keratinization, their anti-inflammatory properties   CRISPR (also discussed above) are being prioritized for
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            may also play a significant role. Importantly, targeted   severe truncating mutations in preclinical models.  This
            anti-inflammatory therapies–such as IL-1 inhibitors or   mutation-centered  paradigm  underscores  the  need  for
            phospholipase A2 blockers–have not been systematically   rapid genetic diagnosis to stratify treatment intensity.
            studied  in  HI, despite their  success  in  treating  other   However, access to advanced diagnostic tools, such as
            inflammatory skin conditions.  Under the proposed   whole-exome and NGS, can also be limited in resource-
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            inflammatory-lipidome axis framework, such agents may   poor  settings,  further  complicating timely and accurate
            have therapeutic potential, particularly in individuals with   diagnoses. The long-term safety and efficacy of emerging


            Volume 4 Issue 3 (2025)                         5                           doi: 10.36922/GPD025050009
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