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Advances in Radiotherapy
            & Nuclear Medicine                                                 EZH2 inhibition in ARID1A-deficient TNBC



            1. Background                                      a T-cell response.   Table  1 lists key clinical studies of
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                                                               immunotherapy in ARID1A-deficient tumors.
            Triple-negative breast cancer (TNBC) is defined by
            the absence of estrogen receptor and progesterone    Although the effectiveness of immune checkpoint
            receptor expression,  as well as  the  amplification  of  the   inhibitors  (ICIs)  in  breast  cancer  is  less  pronounced
            human epithelial growth factor receptor 2. TNBC is   than  that  seen  in  other  tumor  types,  and  most  patients
            a heterogeneous disease comprising subtypes such as   with TNBC ultimately develop resistance to these
                                                                    12
            basal-like (BL1 and BL2), mesenchymal (M), and luminal   agents,   ARID1A-deficiency in TNBC has been shown
            androgen receptors.  Each  TNBC subtype is  associated   to increase chromatin accessibility and gene expression
                            1
            with different transcriptional patterns and immune cell   of nucleophosmin 1, which in turn further activates
            compositions. Notably, M-subtype tumors exhibit high   PD-L1 transcription.  Elevated PD-L1 levels could
                                                                                 13
            mutational loads, genomic instability, lack of immune cells,   render this subgroup more responsive to ICIs; however,
            low programmed cell death ligand 1 (PD-L1) expression,   ARID1A deficiency was also found to inhibit CD8  T cells,
                                                                                                       +
            decreased global DNA methylation, and transcriptional   contributing to adaptive immune resistance in TNBC.
                                                                                                            13
            repression of genes responsible for antigen presentation.    Using xenograft models, Chen et al.  demonstrated that
                                                          1
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            The presence of immune cells has been associated with   TNBC with low  ARID1A expression-induced PD-L1
            survival; tumors with fewer immune cells have displayed   elevation was associated with reduced tumor volume and
            a trend toward shorter progression-free intervals, whereas   pulmonary metastasis when treated with atezolizumab
            tumors with greater stromal immune cells have shown   (anti-PD-L1), compared to  ARID1A-high TNBC.
            a lower risk of recurrence.  Variations in immune cell   This occurred despite insufficient anti-tumor immune
                                  1-3
            composition and genetic susceptibilities specific to different   infiltrates, especially CD8  T cells.  Notably, atezolizumab
                                                                                   +
                                                                                          13
            subtypes indicate potential new treatment approaches for   significantly increased the CD45 CD8  T-cell population
                                                                                         +
                                                                                              +
            TNBC to enhance the efficacy of immunotherapy.  For   in the  ARID1A-deficient tumors.  Tumor tissues from
                                                      1
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            example, deletions of DNA repair genes and members   patients with metastatic TNBC treated with pucotenlimab
            of the BRG1-associated factors, SWItch/Sucrose Non-  (anti-PD-1) with gemcitabine and cisplatin were analyzed
            Fermentable (SWI/SNF) complex, are more commonly   for ARID1A deficiency and PD-L1 expression as part of the
            observed in M-subtype  TNBC tumors.  The SWI/SNF   CTR20191353 clinical trial.  Kaplan–Meier progression-
                                             1
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            complex regulates chromatin structure and is one of the   free survival (PFS) analysis based on ARID1A and PD-L1
            most frequently mutated protein complexes in human   expression demonstrated that patients with low ARID1A
            cancers.  It has also been found that SWI/SNF has a role   expression had significantly longer PFS.  The longest PFS
                  4,5
                                                                                               13
                                         6
            in regulating anti-tumor immunity.  Research indicates   observed was 615  days in the  ARID1A-low/PD-L1-high
            approximately 30% of breast tumors exhibit genetic   subgroup. 13
            alterations in one or more SWI/SNF subunits, such as the
            AT-rich interactive domain 1A gene (ARID1A), and these   Given these findings of PD-L1 elevation but low anti-
            gain-  and loss-of-function mutations are linked to the   tumor immune infiltrates, exploration of combination
            initiation and progression of cancer.  Low expression levels   therapies to further enhance the effects of ICIs in ARID1A-
                                        4
            of ARID1A are found in 78% of TNBCs and are associated   deficient TNBC through immune stimulation is warranted.
            with poor prognosis.  The loss of  ARID1A expression   Therapeutic strategies for  ARID1A-mutant breast
                             4,7
            presents a challenge for therapeutic targeting, highlighting   cancer  include inhibition of enhancer of zeste homolog
                                                                       4
            the necessity to uncover therapeutic vulnerabilities in   2 (EZH2).  EZH2 is an enzymatic catalytic subunit of
            ARID1A-deficient tumors.  ARID1A deficiency has been   polycomb repressive complex 2 (PRC2), one of two main
                                 6
            shown  to  variably  enhance  PD-L1  expression,  but  the   polycomb group complexes that mediate gene silencing
            overall impact on immune cell populations can vary. While   mainly through modulating chromatin structure. 14-16
            ARID1A deficiency may promote an immune response,   EZH2 induces trimethylation of lysine 27 of histone H3
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            it does not guarantee an increase in tumor-infiltrating   (H3K27me3)  and deposition of H3K27me3 at target genes
            lymphocytes (TILs) across all tumor types.  For example,   signals for polycomb repressive complex 1 recruitment,
                                              8,9
            Sun  et  al.  demonstrated increased infiltration of CD4 +   which in turn enforces transcriptional silencing through
                    10
            T cells and Th17 cells, along with enhanced CD8 effector   compaction of chromatin.  Targeting epigenetic regulators
                                                                                   18
            and antigen presentation signatures in ARID1A-deficient   such  as EZH2  may  enhance  tumor immunogenicity,
            gastric cancer.  Conversely, Jung  et al.   found that   improve immune cell function, and modulate the
                                               11
                        10
            low  ARID1A expression was associated with decreased   immunosuppressive tumor microenvironment (TME)
            CD8 T-cell infiltration in ovarian clear cell carcinoma,   to synergize with immunotherapy.  EZH2 contributes
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            suggesting that blocking PD-L1 is unlikely to result in   to cancer progression through various mechanisms,
            Volume 3 Issue 1 (2025)                         29                             doi: 10.36922/arnm.5132
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