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Matsugaki, et al.
           treatments,  the  supernatants  were  disposed.  The   stimulation with a peak shear stress of 80 dyn/cm
                                                                                                              2
           obtained  supernatants  involving  from  the  third   for 4 h. Static control cells were also inserted into
           to fifth treatments were collected in α-MEM. We     the flow chambers without flow stimulation. The
           filtrated the collections through a cell strainer (BD   applied shear stress was calculated based on the
           Biosciences), centrifuged, and the supernatant was   Hagen–Poiseuille equation:
           removed.  The extracted  cells  were resuspended                   =  4Q                       (1)
                                                                                          3
           in  α-MEM containing  10% fetal  bovine  serum,                    w         R
           penicillin/streptomycin (Thermo Fisher Scientific)    Where,  τ   is  the  fluid  shear  stress,  Q  is  the
                                                                          w
           for cell culture. The obtained cells were then plated   volumetric  flow  rate,  R  is  the  radius  of  tubing,
           into the fabricated specimens at a density of 2.0 ×   approximating  the  flow  channel  as  the  same
           10 cells per mL. The media were changed twice       number  of  collagen  fiber  strings,  and  µ is the
             4
           weekly, and after culturing for 1 week, the media   viscosity  coefficient  of  the  culture  medium.
           were supplemented to reach final concentrations     To  apply  the  Hagen–Poiseuille  equation,  the
           of 10 mM  β-glycerophosphate  (Tokyo Kasei),        following conditions were satisfied: Steady-state
           50 µg/mL ascorbic acid (Sigma-Aldrich), and 50      laminar  flow,  inelastic  tubing,  and  Newtonian
           nM dexamethasone (MP Bioscience).                   fluid of culture medium.

           2.4 Primary culture of osteocyte                    2.6 Analysis of substrate collagen orientation

           We  isolated  primary  osteocytes  from  mature     The collagen orientation  in the fabricated
           murine  femurs, humeri,  and tibiae  based on a     scaffold  was  assessed  using  a  birefringence
           sequential digestion method . Long bones were       measurement  system  (WPA-micro,  Photonic
                                      [21]
           excised from mature C57BL/6 mice in fresh           Lattice).  The  integrated  polarizer  allowed  to
           α-MEM (Thermo Fisher Scientific) with penicillin/   detect the polarization axis with the greater index
           streptomycin.  The  surrounding  tissues around     of refraction (slow axis). The average direction of
           the bone were eliminated.  The obtained bone        the slow axis in collagen molecule corresponding
           specimens were then cut into fraction of 1–2 mm     to  each pixel was analyzed  using the  equipped
           in length and cleaned in HBSS. The pieces were      software (WPA-VIEW, Photonic Lattice).
           exposed to total nine repeated cycles of enzymatic
           digestion procedure for 25 min at 37°C each step.   2.7 Immunostaining
           During the first three digestions, we incubated the   The cells were fixed with paraformaldehyde and then
           bone fragments with collagenase (Wako) solution     washed with PBST (PBS-Triton X100) containing
           followed  by  cleaning  in  HBSS  thrice.  From  the   normal goat serum (Thermo Fisher Scientific) for
           fourth treatment, we incubated the bone fragments   30 min to avoid non-specific binding of antibodies.
           in collagenase and ethylenediaminetetraacetic acid   We incubated the fixed cells with primary antibodies
           in turns and cleaned in HBSS thrice. Following      against Sclerostin (Abcam) or Src (Cell Signaling)
           that, the treated bone fragments were cut and       at 4°C for half a day. After rinsing with PBST, we
           immersed in α-MEM with penicillin/streptomycin      applied  secondary  antibodies  (Alexa  Fluor  546
           and 10% fetal bovine serum. Osteocyte-like cells    Immunoglobulin  G,  Thermo  Fisher  Scientific)
           were obtained  from migrated  cells  from the       and  DAPI  (Thermo  Fisher  Scientific)  at  room
           cultured bone chips after 7–10 days. Isolated cells   temperature for 2 h. For visualization of F-actin, the
           were plated into the fabricated 3D substrates at a   cells were incubated with Alexa Fluor 488 phalloidin
           diluted density of 1 × 10  cells/mL.                (Thermo Fisher Scientific). Finally, the stained cells
                                  5
           2.5 Fluid flow stimulation                          were washed in PBST, followed by mounting using
                                                               Antifade  Reagent  (Prolong  Gold,  Thermo  Fisher
           The  cell-seeded  3D  scaffolds  were  inserted     Scientific). Fluorescent images were obtained under
           into  custom-made  flow  chambers  for  fluid  flow   a confocal microscope (FV1000D-IX81, Olympus)

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