Page 109 - MI-2-3

Microbes & Immunity SARS-CoV-2 complementary classification

doi: 10.1056/NEJMe2407575 the SARS-CoV-2 sarbecovirus lineage responsible for the
COVID-19 pandemic. Nat Microbiol. 2020;5(11):1408-1417.
5. He F, Deng Y, Li W. Coronavirus disease 2019: What we
know? J Med Virol. 2020;92(7):719-725. doi: 10.1038/s41564-020-0771-4
doi: 10.1002/jmv.25766 17. Pereson MJ, Mojsiejczuk L, Martínez AP, Flichman DM,
6. Joseph S, Kutty Narayanan A. Covid 19-the 21 century Garcia GH, Di Lello FA. Phylogenetic analysis of
st
pandemic: The novel coronavirus outbreak and the SARS-CoV-2 in the first few months since its emergence.
treatment strategies. Adv Pharm Bull. 2022;12(1):34-44. J Med Virol. 2021;93(3):1722-1731.
doi: 10.34172/apb.2022.005 doi: 10.1002/jmv.26545
7. Sah P, Fitzpatrick MC, Zimmer CF, et al. Asymptomatic 18. Canuti M, Bianchi S, Kolbl O, et al. Waiting for the truth: is
SARS-CoV-2 infection: A systematic review and meta- reluctance in accepting an early origin hypothesis for SARS-
analysis. Proc Natl Acad Sci U S A. 2021;118(34):e2109229118. CoV-2 delaying our understanding of viral emergence? BMJ
Glob Health. 2022;7(3):e008386.
doi: 10.1073/pnas.2109229118
doi: 10.1136/bmjgh-2021-008386
8. Gandhi RT, Lynch JB, Del Rio C. Mild or moderate Covid-19.
N Engl J Med. 2020;383(18):1757-1766. 19. Pekar JE, Magee A, Parker E, et al. The molecular
epidemiology of multiple zoonotic origins of SARS-CoV-2.
doi: 10.1056/NEJMcp2009249 Science. 2022;377(6609):960-966.
9. Çelik I, Öztürk R. From asymptomatic to critical illness: doi: 10.1126/science.abp8337
Decoding various clinical stages of COVID-19. Turk J Med
Sci. 2021;51(Si-1):3284-3300. 20. Bukin YS, Bondaryuk AN, Kulakova NV, Balakhonov SV,
Dzhioev YP, Zlobin VI. Phylogenetic reconstruction of the
doi: 10.3906/sag-2107-137 initial stages of the spread of the SARS-CoV-2 virus in the
10. Nikolich-Zugich J, Knox KS, Rios CT, Natt B, Bhattacharya D, Eurasian and American continents by analyzing genomic
Fain MJ. SARS-CoV-2 and COVID-19 in older adults: What data. Virus Res. 2021;305:198551.
we may expect regarding pathogenesis, immune responses, doi: 10.1016/j.virusres.2021.198551
and outcomes. GeroScience. 2020;42(2):505-514.
21. Domingo JL. What we know and what we need to know about
doi: 10.1007/s11357-020-00186-0 the origin of SARS-CoV-2. Environ Res. 2021;200:111785.
11. Boyton RJ, Altmann DM. The immunology of asymptomatic doi: 10.1016/j.envres.2021.111785
SARS-CoV-2 infection: What are the key questions? Nat Rev
Immunol. 2021;21(12):762-768. 22. Latinne A, Hu B, Olival KJ, et al. Origin and cross-species
transmission of bat coronaviruses in China. Nat Commun.
doi: 10.1038/s41577-021-00631-x 2024;15(1):10705.
12. Naqvi AAT, Fatima K, Mohammad T, et al. Insights into doi: 10.1038/s41467-024-55384-7
SARS-CoV-2 genome, structure, evolution, pathogenesis
and therapies: Structural genomics approach. Biochim 23. Voskarides K. SARS-CoV-2: Tracing the origin, tracking the
Biophys Acta Mol Basis Dis. 2020;1866(10):165878. evolution. BMC Med Genomics. 2022;15(1):62.
doi: 10.1016/j.bbadis.2020.165878 doi: 10.1186/s12920-022-01208-w
13. Rahimi A, Mirzazadeh A, Tavakolpour S. Genetics and 24. Lopes LR, de Mattos Cardillo G, Paiva PB. Molecular
genomics of SARS-CoV-2: A review of the literature with evolution and phylogenetic analysis of SARS-CoV-2
the special focus on genetic diversity and SARS-CoV-2 and hosts ACE2 protein suggest Malayan pangolin as
genome detection. Genomics. 2021;113(1 Pt 2):1221-1232. intermediary host. Braz J Microbiol. 2020;51(4):1593-1599.
doi: 10.1016/j.ygeno.2020.09.059 doi: 10.1007/s42770-020-00321-1
14. Alwine JC, Casadevall A, Enquist LW, Goodrum FD, 25. Samson S, Lord É, Makarenkov V. Assessing the emergence
Imperiale MJ. A critical analysis of the evidence for the time of SARS-CoV-2 zoonotic spillover. PLoS One.
SARS-CoV-2 origin hypotheses. mSphere. 2023;8(2):e0011923. 2024;19(4):e0301195.
doi: 10.1128/msphere.00119-23 doi: 10.1371/journal.pone.0301195
15. Hao YJ, Wang YL, Wang MY, et al. The origins of COVID-19 26. Ruiz-Aravena M, McKee C, Gamble A, et al. Ecology,
pandemic: A brief overview. Transbound Emerg Dis. evolution and spillover of coronaviruses from bats. Nat Rev
2022;69(6):3181-3197. Microbiol. 2022;20(5):299-314.
doi: 10.1111/tbed.14732 doi: 10.1038/s41579-021-00652-2
16. Boni MF, Lemey P, Jiang X, et al. Evolutionary origins of 27. Holmes EC, Goldstein SA, Rasmussen AL, et al. The origins of

Volume 2 Issue 3 (2025) 101 doi: 10.36922/MI025190042