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Microbes & Immunity                                                      An ATP-free packaging of T4 DNA



            11.  Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P.      doi: 10.1073/pnas.1105547108
               Molecular Biology of the Cell. 4  ed. New York, USA: Garland   24.  Renner CB, Doyle PS. Stretching self-entangled DNA molecules
                                     th
               Publishing, Inc.; 2002.                            in elongational fields. Soft Matter. 2015;11:3105-3114.
               doi: 10.1201/9780203833445                         doi: 10.1039/C4SM02738H
            12.  Clapham DE. Calcium signaling. Cell. 2007;131:1047-1058.  25.  Tongu C, Kenmotsu T, Yoshikawa Y,  Zinchenko A,
               doi: 10.1016/j.cell.2007.11.028                    Chen N, Yoshikawa K. Divalent cation shrinks DNA but
                                                                  inhibits its compaction with trivalent cation. J Chem Phys.
            13.  Ukuku  DO,  Sapers  GM,  Fett  WF.  ATP  bioluminescence   2016;144:205101.
               assay for estimation of microbial populations of fresh-cut
               melon. J Food Protect. 2005;68:2427-2432.          doi: 10.1063/1.4950749
               doi: 10.4315/0362-028X-68.11.2427               26.  Grayson P, Han L, Winther T, Phillips R. Real-time
                                                                  observations of single bacteriophage lambda DNA ejections
            14.  Gosule LC, Schellman JA. Compact form of DNA induced   in vitro. Proc Nat Acad Sci U S A. 2007;104:14652-14657.
               by spermidine. Nature. 1976;259:333-335.
                                                                  doi: 10.1073/pnas.0703274104
               doi: 10.1038/259333a0
                                                               27.  Li D, Liu T, Zuo X, Li T, Qiu X, Evilevitch A. Ionic switch
            15.  Yoshikawa K, Matsuzawa Y. Discrete phase transition of giant   controls the DNA state in phage  λ.  Nucleic Acids Res.
               DNA dynamics of globule formation from a single molecular   2015;43:6348-6358.
               chain. Phys D Nonlinear Phenomena. 1995;84:220-227.
                                                                  doi: 10.1093/nar/gkv611
               doi: 10.1016/0167-2789(95)00020-5
                                                               28.  Leforestier A,  Livolant  F.  The bacteriophage  genome
            16.  Sambrook J, Russell DW. Molecular Cloning: A Laboratory   undergoes a succession of intracapsid phase transitions
               Manual. New York: Cold Spring Harbor Laboratory Press,   upon DNA ejection. J Mol Biol. 2010;396:384-395.
               Cold Spring Harbor; 2001.
                                                                  doi: 10.1016/j.jmb.2009.11.047
            17.  Mason PW, Carbone DP, Cushman RA, Waggoner AS.
               The importance of inorganic phosphate in regulation of   29.  Liu T, Sae-Uenga U, Lia D, Landerb GC, Zuoc X, Jönssond B,
               energy metabolism  of  Streptococcus lactis.  J  Biol Chem.   et al. Solid-to-fluid-like DNA transition in viruses facilitates
                                                                  infection. Proc Nat Acad Sci. 2014;111:14675-14680.
               1981;265:1861-1866.
                                                                  doi: 10.1073/pnas.1321637111
               doi: 10.1016/S0021-9258(19)69886-8
                                                               30.  Evilevitch A, Lavelle L, Knobler CM, Raspaud E,
            18.  Milo R, Phillips R. Cell Biology by the Numbers. New York,   Gelbart WM. Osmotic pressure inhibition of DNA ejection
               USA: Garland Science; 2015.
                                                                  from phage. Proc Nat Acad Sci. 2008;100:9292-9295.
               doi: 10.1201/9780429258770                         doi: 10.1073/pnas.1233721100
            19.  Anderson S. Shotgun DNA sequencing using cloned DNase   31.  Fuller DN, Rickgauer JP, Jardine PJ, Grimes S, Anderson DL,
               I-generated fragments. Nucleic Acids Res. 1981;9:3015-3027.  Smith DE. Ionic effects on viral DNA packaging and portal
               doi: 10.1093/nar/9.13.3015                         motor function in bacteriophage phi29. Proc Nat Acad Sci.
                                                                  2007;104:11245-11250.
            20.  Steward GF, Culley AI. Extraction and purification of nucleic
               acids from viruses. In: Manual of Aquatic Viral Ecology. Ch.      doi: 10.1073/pnas.0701323104
               16. United States: ASLO; 2010. p. 154-165.      32.  Aksyuk AA, Rossmann MG. Bacteriophage assembly.
               doi: 10.4319/mave.2010.978-0-9845591-0-7.154       Viruses. 2011;3:172-203.
            21.  Yoshinaga N, Yoshikawa K, Kidoaki S. Multiscaling in a long      doi: 10.3390/v3030172
               semiflexible polymer chain in two dimensions. J Chem Phys.   33.  Arisaka F, Yap ML, Kanamaru S, Rossmann MG. Molecular
               2002;116:9926-9929.                                assembly and structure of the bacteriophage T4 tail. Biophys
               doi: 10.1063/1.1475759                             Rev. 2016;8:385-396.
            22.  Zinchenko AA, Sergeyev VG, Murata S, Yoshikawa K.      doi: 10.1007/s12551-016-0230-x
               Controlling the intrachain segregation on a single DNA   34.  Bryson AL, Hwang Y, Sherrill-Mix S,  et al. Covalent
               molecule. J Am Chem Soc. 2003;125:4414-4415.       modification of bacteriophage T4 DNA inhibits CRISPR-
               doi: 10.1021/ja028804x                             cas9. mBio. 2015;6(3):e00648.
            23.  Tang J, Du N, Doyle PS. Compression and self-entanglement      doi: 10.1128/mBio.00648-15
               of single DNA molecules under uniform electric field. Proc   35.  Price PA. Characterization of Ca  and Mg  binding to
                                                                                           ++
                                                                                                   ++
               Nat Acad Sci. 2011;108(39):16153-16158.            bovine  pancreatic  deoxyribonuclease  A.  J  Biol Chem.
            Volume 1 Issue 1 (2024)                         79                               doi: 10.36922/mi.2666
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