Page 85 - MI-1-1
P. 85
Microbes & Immunity An ATP-free packaging of T4 DNA
11. Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P. doi: 10.1073/pnas.1105547108
Molecular Biology of the Cell. 4 ed. New York, USA: Garland 24. Renner CB, Doyle PS. Stretching self-entangled DNA molecules
th
Publishing, Inc.; 2002. in elongational fields. Soft Matter. 2015;11:3105-3114.
doi: 10.1201/9780203833445 doi: 10.1039/C4SM02738H
12. Clapham DE. Calcium signaling. Cell. 2007;131:1047-1058. 25. Tongu C, Kenmotsu T, Yoshikawa Y, Zinchenko A,
doi: 10.1016/j.cell.2007.11.028 Chen N, Yoshikawa K. Divalent cation shrinks DNA but
inhibits its compaction with trivalent cation. J Chem Phys.
13. Ukuku DO, Sapers GM, Fett WF. ATP bioluminescence 2016;144:205101.
assay for estimation of microbial populations of fresh-cut
melon. J Food Protect. 2005;68:2427-2432. doi: 10.1063/1.4950749
doi: 10.4315/0362-028X-68.11.2427 26. Grayson P, Han L, Winther T, Phillips R. Real-time
observations of single bacteriophage lambda DNA ejections
14. Gosule LC, Schellman JA. Compact form of DNA induced in vitro. Proc Nat Acad Sci U S A. 2007;104:14652-14657.
by spermidine. Nature. 1976;259:333-335.
doi: 10.1073/pnas.0703274104
doi: 10.1038/259333a0
27. Li D, Liu T, Zuo X, Li T, Qiu X, Evilevitch A. Ionic switch
15. Yoshikawa K, Matsuzawa Y. Discrete phase transition of giant controls the DNA state in phage λ. Nucleic Acids Res.
DNA dynamics of globule formation from a single molecular 2015;43:6348-6358.
chain. Phys D Nonlinear Phenomena. 1995;84:220-227.
doi: 10.1093/nar/gkv611
doi: 10.1016/0167-2789(95)00020-5
28. Leforestier A, Livolant F. The bacteriophage genome
16. Sambrook J, Russell DW. Molecular Cloning: A Laboratory undergoes a succession of intracapsid phase transitions
Manual. New York: Cold Spring Harbor Laboratory Press, upon DNA ejection. J Mol Biol. 2010;396:384-395.
Cold Spring Harbor; 2001.
doi: 10.1016/j.jmb.2009.11.047
17. Mason PW, Carbone DP, Cushman RA, Waggoner AS.
The importance of inorganic phosphate in regulation of 29. Liu T, Sae-Uenga U, Lia D, Landerb GC, Zuoc X, Jönssond B,
energy metabolism of Streptococcus lactis. J Biol Chem. et al. Solid-to-fluid-like DNA transition in viruses facilitates
infection. Proc Nat Acad Sci. 2014;111:14675-14680.
1981;265:1861-1866.
doi: 10.1073/pnas.1321637111
doi: 10.1016/S0021-9258(19)69886-8
30. Evilevitch A, Lavelle L, Knobler CM, Raspaud E,
18. Milo R, Phillips R. Cell Biology by the Numbers. New York, Gelbart WM. Osmotic pressure inhibition of DNA ejection
USA: Garland Science; 2015.
from phage. Proc Nat Acad Sci. 2008;100:9292-9295.
doi: 10.1201/9780429258770 doi: 10.1073/pnas.1233721100
19. Anderson S. Shotgun DNA sequencing using cloned DNase 31. Fuller DN, Rickgauer JP, Jardine PJ, Grimes S, Anderson DL,
I-generated fragments. Nucleic Acids Res. 1981;9:3015-3027. Smith DE. Ionic effects on viral DNA packaging and portal
doi: 10.1093/nar/9.13.3015 motor function in bacteriophage phi29. Proc Nat Acad Sci.
2007;104:11245-11250.
20. Steward GF, Culley AI. Extraction and purification of nucleic
acids from viruses. In: Manual of Aquatic Viral Ecology. Ch. doi: 10.1073/pnas.0701323104
16. United States: ASLO; 2010. p. 154-165. 32. Aksyuk AA, Rossmann MG. Bacteriophage assembly.
doi: 10.4319/mave.2010.978-0-9845591-0-7.154 Viruses. 2011;3:172-203.
21. Yoshinaga N, Yoshikawa K, Kidoaki S. Multiscaling in a long doi: 10.3390/v3030172
semiflexible polymer chain in two dimensions. J Chem Phys. 33. Arisaka F, Yap ML, Kanamaru S, Rossmann MG. Molecular
2002;116:9926-9929. assembly and structure of the bacteriophage T4 tail. Biophys
doi: 10.1063/1.1475759 Rev. 2016;8:385-396.
22. Zinchenko AA, Sergeyev VG, Murata S, Yoshikawa K. doi: 10.1007/s12551-016-0230-x
Controlling the intrachain segregation on a single DNA 34. Bryson AL, Hwang Y, Sherrill-Mix S, et al. Covalent
molecule. J Am Chem Soc. 2003;125:4414-4415. modification of bacteriophage T4 DNA inhibits CRISPR-
doi: 10.1021/ja028804x cas9. mBio. 2015;6(3):e00648.
23. Tang J, Du N, Doyle PS. Compression and self-entanglement doi: 10.1128/mBio.00648-15
of single DNA molecules under uniform electric field. Proc 35. Price PA. Characterization of Ca and Mg binding to
++
++
Nat Acad Sci. 2011;108(39):16153-16158. bovine pancreatic deoxyribonuclease A. J Biol Chem.
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