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Microbes & Immunity                                     Dynamics between phage, bacteria, and mammalian cells



            2.2. Phage counting                                  In the three-component system, the viability of

            The number of viable phages in stock suspensions and   BEAS-2B cells after various treatments was also assessed
            samples after treatment was determined using the Miles–  using an MTT assay. Briefly, the supernatant of each well
            Misra surface droplet technique.  Serial 10-fold dilutions   was removed and washed twice with PBS. The remaining
                                      33
            were performed by adding 20 μL samples to 180 μL PBS.   bacteria were killed by incubating 3× minimum inhibitory
            A volume of 200 μL host bacteria (OD ~1) was mixed with   concentrations (MIC) of colistin solution (6  μg/mL),
                                                                                                         34
                                         600
            5 mL molten soft agar (0.7% agar, 48°C) and overlayed onto   determined using the broth microdilution method,  for
            a solidified nutrient agar made of 1.5% agar and nutrient   3 h to minimize its impacts on the MTT assay. Thereafter,
            broth. A volume of 10 μL diluted phage samples was dropped   the spent medium was replaced with 190 μL DMEM and
            onto the agar lawn in triplicate, air-dried, and incubated at   10 μL MTT solution (5 mg/mL, Sigma Aldrich, USA) and
            37°C overnight. Diluted samples, yielding 3 – 30 plaques,   incubated in a 5% CO  humidified incubator at 37°C for 4 h.
                                                                                2
            were used for phage viability calculation using the equation:  After removing the medium, DMSO was added to dissolve
                                                               the formazan crystals for optical density measurement
            Phage titer (PFU/mL) = Average plaque counts × Dilution   (OD ) using a microplate reader (Multiskan FC, Thermo
                                                                  570
            factor × 100                                (I)    Scientific, USA). The control group treated with PBS was
                                                               defined as 100% survival. The survival ratio of phage-
            2.3. Bacterial viability assessment
                                                               treated groups was calculated according to the ratio of
            The bacteria viability in PBS and phage-treated samples was   absorbance  values  between the  phage-treated and  PBS-
            determined through plate counting. Briefly, 20 μL samples   treated groups.
            were pipetted out for 10-fold dilution with PBS. A volume
                                                                 The experiment was performed in biological replicates
            of 10  μL diluted phage samples was dropped onto the   (n = 6) and repeated in two independent experiments. After
            nutrient agar plate in triplicate, air-dried, and incubated   the investigation with AB406 phages, the experimental
            at 37°C overnight for bacterial plating. Bacterial colonies   conditions were set for simultaneous co-incubation
            (3‒30 valid) visible to the naked eye were counted using a
            manual counter. The corresponding colony-forming unit   (Condition ii) at a phage-to-bacteria MOI of 100:1 to
                                                               examine the effects of other phage types (AB2 and AB9) in
            (CFU/mL) was calculated similarly to the phage counting   the co-culture system.
            described above.
                                                               2.5. Adsorption assays
            2.4. In vitro antibacterial efficiency efficiency in a
            three-component coculture system                   Adsorption of phages and bacteria onto the epithelial
                                                               cell surface was evaluated to elucidate their physical
            The AB406 phage was first used to study the antibacterial   interactions in the co-culture system.
            effects of various incubation conditions with the human
            lung epithelial cell line BEAS-2B (three-component).   2.5.1. Phage-epithelial cell adsorption assay
            BEAS-2B cells were seeded in a 96-well plate at 3 × 10  cells
                                                      4
            per well in 100  μL of DMEM culture medium. After   BEAS-2B cells were seeded in a 96-well plate at 3 ×
                                                                 4
            overnight incubation, the spent medium was removed and   10  cells per well in 100 μL DMEM culture medium. After
            three  incubation conditions  were examined  (Figure  1A):   overnight incubation, the spent medium was removed, and
                                                                                                             9
            (i)  90  μL  bacteria  (~10   CFU/mL)  pre-incubated  with   the cells were further incubated with 100 μL phage (~10
                                7
            BEAS-2B cells for 4 h, followed by co-incubation with 10   PFU/mL) suspended in DMEM in the absence or presence
                                                                            7
            μL AB406 phage for 24 h; (ii) 90 μL bacteria and 10 μL   of bacteria (~10  CFU/mL). After 24-h incubation at 37°C
            AB406 phage co-incubated simultaneously with BEAS-2B   and 5% CO , the wells were washed 3  times with PBS
                                                                         2
            cells for 28 h; and (iii) 10 μL AB406 phage pre-incubated   to remove any unadsorbed phages.  Thereafter, 100  μL
            with BEAS-2B cells for 4  h, followed by co-incubation   PBS containing 2% Triton X-100 was added to the lysate
            with 90 μL bacteria for 24 h at 37°C and 5% CO . Different   cells, following vigorous pipetting. A  20  μL sample was
                                                  2
            phage-to-bacteria ratios (multiple of infection [MOI]: 1:1,   withdrawn from each well for plaque assay to quantify
            10:1, 100:1, and 1000:1) were studied. After the incubation   the adhered/internalized phages. The experiment was
            period, an aliquot of the bacterial culture (20 μL) was taken   performed in biological replicates (n = 3) and repeated two
            after vigorous pipetting for bacterial and phage counting.   independent times.
            The antibacterial efficiency of AB406 phage against   The adherence of phages onto the BEAS-2B cells
            MDR-AB2 bacteria in the absence of BEAS-2B cells was   was  also visualized  with  fluorescence  staining  assay
            evaluated along with the three-component system for direct   using fluorescein isothiocyanate (FITC)-labeled phages
            comparison.                                        according to reported procedures.  Briefly, the phage
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            Volume 1 Issue 1 (2024)                         83                               doi: 10.36922/mi.3141
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