Page 12 - GPD-1-2

Gene & Protein in Disease DNA methylation and gene expression on rats with protein malnutrition

Figure 1. Regional distribution of reference genome alignment.

Table 3. Statistical table of gene expression value distribution in each sample.

Sample Exp gene Min. 1 Qu. Median Mean 3 Qu. Max. Sd. Sum.
rd
st
LPE_1 13,897 0.00 0.17 0.68 20.92 2.12 100,118.16 944.65 290,677.27
LPE_2 14,566 0.00 0.25 1.20 20.94 3.83 79,119.20 782.82 304,980.25
LPE_3 12,791 0.00 0.09 0.28 22.73 0.93 103,934.75 1047.15 290,738.28
LPE_4 13,908 0.00 0.22 0.88 21.48 2.70 95,642.32 912.56 298,781.54
LPF_1 12,113 0.00 0.07 0.21 24.51 0.73 124,902.09 1245.18 296,859.96
LPF_2 13,894 0.00 0.19 0.75 21.24 2.25 90,630.45 899.69 295,102.61
LPF_3 13,937 0.00 0.17 0.71 22.50 2.17 114,011.71 1079.30 313,581.54
LPF_4 14,273 0.00 0.23 0.96 22.13 2.89 107,773.62 977.68 315,828.50
CON_1 14,332 0.00 0.22 1.03 21.81 3.28 110,772.82 998.48 312,629.31
CON_2 13,366 0.00 0.14 0.50 20.85 1.49 98,315.52 965.55 278,649.78
CON_3 13,951 0.00 0.20 0.85 20.87 2.54 96,050.62 922.73 291,113.76
CON_4 15,626 0.00 0.38 2.78 21.20 9.32 49,694.29 473.42 331,285.81
LPE: Early-life low-protein group, LPF: Fetal low-protein group, CON: Control group

of gene transcripts of each sample was measured by the the change of expression trend among different samples
concept of coverage (Table 5). (Figure 3). Ideally, the expression density map of each
The expression density map of log10 (FPKM) after the sample should conform to the normal distribution, and
treatment of different samples can be used to compare the expression trend of biological repeat samples should

Volume 1 Issue 2 (2022) 6 https://doi.org/10.36922/gpd.v1i2.169